- Basic information
- CohesinDB ID: CDBP00416350
- Locus: chr21-30206628-30206839
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Data sourse: GSE101921
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Cell type: HMEC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 84%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MAFG, BRD3, TOP2A, STAG2, SMAD3, MAFF, FOXA1, KDM1A, MEF2A, ZNF384, JUNB, HIF1A, BACH1, NKX2-1, STAT3, MAX, FOS, NFE2, MED1, SPDEF, NFE2L2, C11orf30, SETDB1, CTCF, JUN, BRD2, BCL11A, MAFK, REST, BRD4, E2F1, MRTFB, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops