- Basic information
- CohesinDB ID: CDBP00416351
- Locus: chr21-30209580-30209935
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE67783, ENCSR000BKV, GSE72082, GSE116868, ENCSR000BLY, GSE105028, GSE101921, ENCSR000ECE, GSE68388, GSE83726, ENCSR703TNG, GSE131606, GSE97394
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Cell type: MCF-7, H1-hESC, HMEC, RH4, MB157, DKO, HUES64, SK-N-SH, K-562, HSPC, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.867
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 87%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, TOP2A, CDK7, ZFX, ZNF534, XBP1, SOX2, STAG2, ZSCAN5A, MEIS2, ERG3, ERG2, PBX2, HOXB13, ZFHX2, RELA, TARDBP, SMARCA4, RAD21, GRHL3, HIF1A, SOX11, GABPA, MAX, PRDM14, ZNF143, MITF, ARNTL, ZNF512, ESR1, PKNOX1, MED26, GRHL2, ZNF334, SETDB1, EGR2, CTCF, T, AR, ZNF366, EGR1, NOTCH3, BRD4, MAZ, SMC1, ZNF528, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops