- Basic information
- CohesinDB ID: CDBP00416354
- Locus: chr21-30227589-30228201
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Data sourse: ENCSR230ZWH, ENCSR000BLY, ENCSR879KXD, GSE101921, GSE85526, GSE206145-NatGen2015, GSE68388, GSE73207, ENCSR917QNE
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Cell type: HMEC, Fibroblast, MCF-10A, HEKn, TF-1, SK-N-SH, K-562, Liver, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 65%,
"7_Enh": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, PGR, SOX2, MEIS2, FOXA1, PBX2, ATF3, NFIC, CHD7, ATF4, SMARCE1, TP63, MITF, HDAC3, SFPQ, JMJD1C, TEAD1, ELF1, TRIM28, ETV1, SNAI2, NFE2L2, ESR1, ZFP91, CTCF, TCF12, JUN, BAF155, E4F1, EP300, MNT, GATA6, DPF2, TRIM24, SOX6, TEAD4, PDX1, RBPJ, TFAP2C, NANOG, CDK7, ERF, MTA2, DUX4, STAT1, NBN, ARID3A, ERG, SMARCC2, MYC, ONECUT1, SMARCA4, ARID1B, RAD21, FOXP2, GRHL3, RXRA, NKX2-1, GABPA, STAT3, XRCC5, NKX3-1, IKZF1, RCOR1, NFE2, NR2F6, ZNF639, VDR, ARNTL, NR3C1, ESRRA, ZNF750, CEBPB, DACH1, CREB1, EZH2, TBL1XR1, GRHL2, TRPS1, SPI1, EHF, HDAC2, GATA2, GATAD2B, TAF9B, FLI1, MRTFB, NCOA2, ATF1, RUNX1, SMC1A, CBX1, HDAC1, NKX2-2, EZH2phosphoT487, MAFG, SIN3A, ZFX, LDB1, CEBPA, SMAD3, ZMIZ1, RARA, CREBBP, ZNF384, GATA4, GR, PBX4, DAXX, NRF1, ARNT, HMBOX1, CBFA2T3, FOXM1, MAFB, FOS, CDK8, PBX3, MED1, GMEB1, PML, CEBPD, PIAS1, SMAD1, C11orf30, SETDB1, STAT5A, KLF16, MAFK, BCL11A, SP1, HNF4A, REST, ARID1A, CCNT2, ATF7, ASH2L, FOXP1, STAG2, NFATC3, CBFA2T2, PPARG, FOXA2, CBX3, CREM, MAFF, MEF2C, CDK9, HOXB13, ZKSCAN1, KDM1A, YY1, RELA, JUNB, NEUROD1, AHR, ZFP36, HIF1A, OTX2, GATA3, TAL1, MAX, GATA1, ZNF143, TLE3, CEBPG, ZNF592, KLF4, GFI1B, NR2F2, NR2F1, TCF7L2, KDM5B, TP53, NFKB1, BRD2, BHLHE40, AR, ZBTB40, RXR, EGLN2, MYNN, NCOR1, RNF2, BRD4, JUND, ILF3, IRF9, BRCA1, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops