- Basic information
- CohesinDB ID: CDBP00416360
- Locus: chr21-30263358-30263699
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, CHD8, TBL1X, RUNX2, MYCN, CRY1, ZFX, ZBTB48, MED26, CLOCK, SETDB1, MAZ, STAT3, CTCF, SPI1
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000171189,
- Related loop:
chr21:29925000-29950000~~chr21:30250000-30275000,
chr21:29943210-29945043~~chr21:30257090-30259197,
chr21:30025000-30050000~~chr21:30250000-30275000,
chr21:30043713-30045634~~chr21:30257148-30259258,
chr21:30043756-30045614~~chr21:30257090-30259197,
chr21:30043774-30045603~~chr21:30257103-30259279,
chr21:30043897-30045697~~chr21:30256685-30258690,
chr21:30070984-30073381~~chr21:30257090-30259197,
chr21:30071470-30073906~~chr21:30257148-30259258,
chr21:30071597-30073842~~chr21:30257103-30259279,
chr21:30071764-30073904~~chr21:30256697-30259212,
chr21:30075000-30100000~~chr21:30250000-30275000,
chr21:30150000-30175000~~chr21:30250000-30275000,
chr21:30208954-30210477~~chr21:30257090-30259197,
chr21:30208982-30210528~~chr21:30257106-30259191,
chr21:30208984-30210508~~chr21:30257092-30259179,
chr21:30209042-30210435~~chr21:30257097-30258737,
chr21:30250000-30275000~~chr21:30400000-30425000,
chr21:30250000-30275000~~chr21:30500000-30525000,
chr21:30250000-30275000~~chr21:31050000-31075000,
chr21:30257134-30259115~~chr21:31179827-31181941,
chr21:30268150-30269592~~chr21:31085537-31087555,
chr21:30268178-30269643~~chr21:30408195-30409710,