- Basic information
- CohesinDB ID: CDBP00416365
- Locus: chr21-30319395-30319903
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 86%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, MYCN, ZNF263, KDM4C, ZFX, XBP1, ZBTB48, ZSCAN5A, WT1, FOXA1, CDK9, HOXB13, YY1, RELA, SP140, ARNT, HIF1A, PRDM1, ETV6, ZNF143, EZH2, ESR1, SETDB1, CTCF, MNT, AR, NOTCH3, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 194
- Number of somatic mutations (non-coding): 0
- Related genes and loops