- Basic information
- CohesinDB ID: CDBP00416377
- Locus: chr21-30408624-30409551
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Data sourse: ENCSR000BLD, ShirahigeLab-GSE177045, ENCSR230ZWH, GSE72082, ENCSR000BSB, GSE116868, ENCSR000BLY, GSE105028, GSE103477, GSE111537, GSE131606, GSE25021, ENCSR000EDW, ENCSR000BUC, ENCSR917QNE, GSE115602, ENCSR000BTU, GSE93080, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE101921, GSE152721, GSE138105, GSE130135, ENCSR703TNG, GSE106870, GSE116344, GSE145327, ENCSR000EEG, GSE76815, GSE115248, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE85526, ENCSR000ECE, ShirahigeLab, ENCSR000EHX, GSE97394, ENCSR217ELF, ENCSR000BTQ, GSE55407, ENCSR167MTG, GSE131956, GSE129526, GSE111913, GSE155324, GSE38411, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR000ECS, GSE131577
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Cell type: MDM, RH4, GM2610, SLK, CVB-hiPSC, HSPC, CVI-hiPSC, Liver, HuCC-T1, H9-hESC, GM2630, HMEC, HEKn, Ishikawa, Kelly, GM12890, HeLa-S3, BCBL-1, K-562, GM18486, DKO, H1-hESC, SNYDER, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, RT-112, THP-1, HUES64, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, A-549, GM19238, OCI-AML-3, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 28% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.489
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 59%,
"9_Het": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, ZNF660, ZSCAN5C, XBP1, FOXA1, TFAP4, ATF3, CHD7, PRDM1, ZNF444, ZNF429, ZNF189, PAX5, ELF1, TRIM28, TEAD1, ESR1, MED26, ZNF561, JUN, CTCF, TCF12, BAF155, EP300, KLF1, MNT, GATA6, RYBP, E2F6, IRF4, E2F1, ZNF528, SMC1, TEAD4, FOXA3, PDX1, TFAP2C, RBPJ, NANOG, CHD8, POU5F1, BRD3, ZNF263, MYCN, ZSCAN21, ZBTB17, ZBTB48, STAT1, SRF, GMEB2, SP4, TBP, ERG, ZBTB21, HOXC5, MYC, KDM4A, RFX1, FOXP2, ZNF2, RAD21, PROX1, NKX2-1, FOXK2, GABPA, XRCC5, NKX3-1, RCOR1, HNRNPH1, ZNF639, ZBTB11, CREB1, FOXK1, EZH2, KLF8, JMJD6, GABPB1, ZHX2, MIXL1, HDAC2, GATA2, SIX2, FLI1, MRTFB, NFYB, ZNF554, ZNF76, ATF1, RUNX1, CBX1, SMC1A, NKX2-2, CRY1, SIN3A, ZFX, AFF4, POU4F2, SMAD3, ZNF654, ERG3, TRIM22, CREBBP, NFYC, ZXDC, ZNF35, ZBTB2, ARNT, NRF1, ZNF518A, FOXM1, SP2, FOS, CDK8, MED1, GMEB1, TEAD3, ZXDB, MYB, SCRT2, PIAS1, SMAD1, L3MBTL2, SETDB1, SP1, BCL11A, GSPT2, ARID2, ASH2L, HNRNPLL, MBD2, FOXP1, TCF3, BCOR, SMC3, STAG1, STAG2, CXXC4, ZNF394, TBL1X, FOXA2, RBBP5, MTA3, CHD2, WT1, FOXF1, CDK9, HOXB13, ZNF580, KDM1A, YY1, RELA, NEUROD1, HIF1A, GATA3, MAX, ZNF143, SP7, NCOA3, TCF7L2, KDM5B, TP53, PKNOX1, ZSCAN22, MYOD1, PHOX2B, BRD2, AR, TAF1, EGLN2, ZBTB42, ZBTB26, NOTCH3, BRD4, CLOCK, MAZ, BRCA1
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops
- Related gene:
ENSG00000171189,
- Related loop:
chr21:29925000-29950000~~chr21:30400000-30425000,
chr21:30025000-30050000~~chr21:30400000-30425000,
chr21:30043506-30045681~~chr21:30408230-30409738,
chr21:30050000-30075000~~chr21:30400000-30425000,
chr21:30250000-30275000~~chr21:30400000-30425000,
chr21:30268178-30269643~~chr21:30408195-30409710,
chr21:30339916-30342014~~chr21:30408143-30409974,
chr21:30339931-30341880~~chr21:30408176-30409736,
chr21:30340024-30341985~~chr21:30408114-30409983,
chr21:30340030-30342152~~chr21:30408268-30409710,
chr21:30340373-30341904~~chr21:30408191-30409743,