- Basic information
- CohesinDB ID: CDBP00416382
- Locus: chr21-30436672-30436931
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"14_ReprPCWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBFA2T2, CHD8, ZSCAN5D, MYCN, FOXA2, NKX2-2, ZFX, ZBTB48, ZSCAN5A, WT1, FOXA1, HOXB13, ERG, RELA, ASCL1, SP140, DAXX, SOX11, NKX3-1, TLE3, PDX1, PIAS1, ZNF334, SETDB1, CTCF, BAF155, HNF4A, AR, GATA2, ARID1A, FLI1, BRD4, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 12
- Related genes and loops
- Related gene:
- Related loop:
chr21:29375000-29400000~~chr21:30425000-30450000,
chr21:30043654-30045703~~chr21:30433235-30435097,
chr21:30043774-30045603~~chr21:30433524-30435077,
chr21:30325000-30350000~~chr21:30425000-30450000,
chr21:30340030-30342152~~chr21:30433551-30435071,
chr21:30340048-30341945~~chr21:30433610-30434852,
chr21:30340360-30341986~~chr21:30433572-30435022,
chr21:30344537-30345918~~chr21:30433207-30435071,
chr21:30425000-30450000~~chr21:31075000-31100000,
chr21:30425000-30450000~~chr21:31600000-31625000,
chr21:30433599-30434839~~chr21:31085880-31087834,