- Basic information
- CohesinDB ID: CDBP00416383
- Locus: chr21-30442099-30442432
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Data sourse: GSE206145-NatGen2015, GSE111913
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Cell type: RT-112, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"14_ReprPCWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, NANOG, FOXA2, SOX2, NME2, XBP1, ZBTB48, FOXA1, HOXB13, ERG, TFAP4, RELA, ZNF384, CHD7, GRHL3, ARNT, GATA3, NKX3-1, GATA1, TLE3, CREB1, PIAS1, ETV1, LMO2, ESR1, SETDB1, BAF155, HNF4A, AR, GATA2, ARID1A, BRD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops