- Basic information
- CohesinDB ID: CDBP00416384
- Locus: chr21-30444187-30444668
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Data sourse: ENCSR000BLD, GSE25021, ENCSR000BLY, GSE105028, GSE101921, ENCSR000ECE, ENCSR000EHX, GSE83726, GSE131606, GSE145327, GSE97394
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Cell type: MCF-7, H1-hESC, HMEC, RH4, DKO, HUES64, SK-N-SH, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CDX2, SMC1A, RAD21, KDM5B, STAG2, HIF1A, BRD4, ESR1, ZNF334, SETDB1, SMC3, CTCF, STAG1, ZNF736
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops