- Basic information
- CohesinDB ID: CDBP00416393
- Locus: chr21-30498159-30498309
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 98%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZSCAN4, TARDBP, NME2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
- Related loop:
chr21:30025000-30050000~~chr21:30500000-30525000,
chr21:30250000-30275000~~chr21:30500000-30525000,
chr21:30350000-30375000~~chr21:30475000-30500000,
chr21:30475000-30500000~~chr21:31075000-31100000,
chr21:30500000-30525000~~chr21:30675000-30700000,
chr21:30500000-30525000~~chr21:30700000-30725000,
chr21:30500000-30525000~~chr21:30800000-30825000,
chr21:30500000-30525000~~chr21:31025000-31050000,
chr21:30500000-30525000~~chr21:31050000-31075000,
chr21:30500000-30525000~~chr21:31075000-31100000,