- Basic information
- CohesinDB ID: CDBP00416413
- Locus: chr21-30699450-30699656
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Data sourse: ENCSR000BLD, GSE105028, GSE86191
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Cell type: H1-hESC, HCT-116, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
19% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 53%,
"9_Het": 47%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CTCF, ZFX, NOTCH3
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000156299,
- Related loop:
chr21:27500000-27525000~~chr21:30700000-30725000,
chr21:30325000-30350000~~chr21:30700000-30725000,
chr21:30350000-30375000~~chr21:30675000-30700000,
chr21:30500000-30525000~~chr21:30675000-30700000,
chr21:30500000-30525000~~chr21:30700000-30725000,
chr21:30675000-30700000~~chr21:30800000-30825000,
chr21:30675000-30700000~~chr21:30875000-30900000,
chr21:30675000-30700000~~chr21:31150000-31175000,
chr21:30675000-30700000~~chr21:31250000-31275000,