- Basic information
- CohesinDB ID: CDBP00416416
- Locus: chr21-30714410-30714790
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Data sourse: ENCSR000BLY, GSE105028, ENCSR000EHX, GSE68388, GSE97394
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Cell type: SK-N-SH, HUES64, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
19% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU5F1, SOX2, SMAD3, FOXA1, HOXB13, HOXC5, YY1, RELA, RAD21, PBX4, GATA3, PBX3, NR3C1, CEBPB, CTCF, TCF12, EP300, HSF1, BRD4, TEAD4, PDX1, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops