- Basic information
- CohesinDB ID: CDBP00416418
- Locus: chr21-30718254-30718541
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Data sourse: GSE38395, GSE85526, ENCSR000BLY, GSE206145
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Cell type: SK-N-SH, hLCL, HEKn, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: NIPBL,Rad21,Mau2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
19% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 88%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, CBX5, PGR, NME2, FOXA1, PBX2, BMI1, NFIC, RUNX3, CHD7, MAF, ZNF217, ESR1, JUN, TCF12, EP300, DPF2, IRF4, RAD51, E2F1, TEAD4, PDX1, RBPJ, BRD3, MTA2, NBN, HOXC5, MYC, SMARCA4, RAD21, LHX2, PROX1, RXRA, BATF3, STAT3, NKX3-1, IKZF1, RCOR1, VDR, NR3C1, CEBPB, STAT5B, GATAD2B, RELB, RUNX1, SMC1A, NKX2-2, AFF4, SIN3A, SMAD3, TRIM22, MEF2A, ZNF384, NOTCH1, PBX4, ARNT, DAXX, BACH1, ATF2, PBX3, FOXM1, FOS, CDK8, MED1, MYB, SMAD1, BCL11A, NIPBL, SP1, HNF4A, REST, ATF7, PHIP, MLLT1, NFATC3, MEF2B, FOXA2, ZNF207, EBF1, MTA3, NFATC1, CREM, ZBTB33, TCF7, MEF2C, YY1, RELA, TARDBP, JUNB, SP140, SKIL, GATA3, BATF, TAL1, MAX, TCF7L2, TP53, PKNOX1, ZNF334, BRD2, TBX21, TAF1, HSF1, IKZF2, JUND, BRD4, CLOCK, ZNF440, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 1
- Related genes and loops