- Basic information
- CohesinDB ID: CDBP00416421
- Locus: chr21-30732889-30733391
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Data sourse: ENCSR000BLD, GSE72082, ENCSR000BSB, ENCSR000BLY, GSE105028, GSE103477, GSE25021, GSE131606, ENCSR000BTU, GSE93080, ENCSR000DZP, ENCSR000EAC, GSE101921, ENCSR703TNG, ENCSR000EHW, GSE85526, ENCSR000ECE, GSE206145, ENCSR000EHX, GSE97394, ENCSR000BTQ, GSE129526, ENCSR000EDE, GSE50893
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Cell type: GM2610, H9-hESC, B-cell, HMEC, HEKn, Ishikawa, GM12890, HeLa-S3, DKO, H1-hESC, GM12878, GM12891, GM2588, SK-N-SH, THP-1, HUES64, MCF-7, HCT-116, MCF-10A
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 9% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.789
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
19% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 98%,
"9_Het": 1%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, NKX2-2, FOXA1, HOXB13, HOXC5, ZBTB2, RAD21, ARNT, MAFB, NKX3-1, TLE3, CEBPG, SCRT2, PIAS1, CREB1, STAG1, ESR1, GRHL2, ZNF22, CTCF, PHOX2B, BAF155, AR, NCOR1, SCRT1, FOXP1, SMC1, SMC3, BRCA1, STAG2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops