- Basic information
- CohesinDB ID: CDBP00416446
- Locus: chr21-30942150-30942654
-
Data sourse: ENCSR000BLD, GSE93080, GSE105028, ENCSR000ECE, GSE97394, GSE50893
-
Cell type: GM12892, GM18526, GM2630, H1-hESC, SNYDER, GM18505, GM2610, GM12878, GM12891, GM2588, GM12890, HUES64, GM19239, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.844
- Subunit: SA1,Rad21,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
21% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 88%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF384, SMC1A, RAD21, ZSCAN16, GRHL3, OCA2, BRD4, TAL1, CTCF
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops