- Basic information
- CohesinDB ID: CDBP00416448
- Locus: chr21-30962068-30962373
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Data sourse: ENCSR000BLD, GSE110061, GSE105028, ENCSR000ECE, GSE68388
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Cell type: H1-hESC, HCT-116, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
21% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, CHD8, ZNF496, TOP2A, ZFX, XBP1, ZBTB48, SRF, TRIM22, ZBTB2, ONECUT1, RAD21, HIF1A, ATF2, MAX, SPIB, ZNF143, CDK8, ARNTL, ESR1, SETDB1, CTCF, SPI1, CLOCK
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops