- Basic information
- CohesinDB ID: CDBP00416451
- Locus: chr21-31030471-31030790
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Data sourse: GSE50893, ENCSR000DZP
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Cell type: GM2610, GM12878
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"14_ReprPCWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, GLIS1, NFATC3, MEF2B, NKX2-2, EBF1, SOX2, ZNF600, MTA2, ZBTB17, GTF2B, FOXA1, MEF2C, CDK9, TRIM22, ZBTB21, MEF2A, ZNF384, MYC, ZNF362, SKIL, ATF2, PRDM9, GABPA, PAX5, SPIB, CDK8, IKZF1, TERF2, ZNF629, BCLAF1, KMT2A, EZH2, ESR1, OCA2, ZNF22, SPI1, TBX21, IRF4, ATF7, ASH2L, IKZF2, JUND, BRD4, ZNF528, RELB, ZNF554, RBPJ
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops