- Basic information
- CohesinDB ID: CDBP00416453
- Locus: chr21-31041449-31041976
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Data sourse: ENCSR000BLD, ENCSR000EAC, ENCSR000DZP, GSE155324, GSE105028, ENCSR000ECE, ENCSR000BMY, GSE131606, GSE50893, GSE97394
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Cell type: GM12892, GM18526, GM2630, H1-hESC, GM2610, Lymphoblast, GM19240, GM12878, GM12891, GM2588, GM12890, GM19238, H9-hESC, HUES64, GM19239, GM18486, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.811
- Subunit: SMC3,Rad21,SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"14_ReprPCWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, EBF1, TOP2A, ZFX, ZNF317, ZBTB48, TBP, MEF2A, RELA, MYC, RAD21, GRHL3, HIF1A, ARNT, OTX2, MED1, ARNTL, CEBPB, NCOA3, TERF1, STAT5B, ESR1, OCA2, ZNF334, SETDB1, CTCF, SPI1, YAP1, IRF4, BRD4, RBPJ
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops