- Basic information
- CohesinDB ID: CDBP00416456
- Locus: chr21-31064726-31065339
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Data sourse: GSE93080, ENCSR000EAC, ENCSR000DZP, ENCSR000BMY, GSE50893
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Cell type: GM12892, GM2630, SNYDER, GM2610, GM19240, GM12878, GM12891, GM2588, GM12890, GM19238, GM19239
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SMC3,Rad21,SA1,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 82%,
"14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, CRY1, MTA2, FOXA1, HOXB13, ERG, RELA, ZBTB2, MYC, RAD21, GRHL3, HIF1A, ARNT, BATF3, BATF, PBX3, PAX5, ZNF143, MITF, ARNTL, ELF1, OCA2, PKNOX1, SETDB1, CTCF, TCF12, SPI1, TBX21, AR, IRF4, BRD4, ZNF528, RBPJ
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 10
- Related genes and loops