- Basic information
- CohesinDB ID: CDBP00416457
- Locus: chr21-31074204-31074275
-
Data sourse: GSE120943, GSE98367
-
Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 76%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: YAP1, ZSCAN5D, TOP2A, ZFX, DUX4, SETDB1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
- Related loop:
chr21:28750000-28775000~~chr21:31075000-31100000,
chr21:28775000-28800000~~chr21:31075000-31100000,
chr21:29075000-29100000~~chr21:31075000-31100000,
chr21:29100000-29125000~~chr21:31075000-31100000,
chr21:29350000-29375000~~chr21:31075000-31100000,
chr21:29375000-29400000~~chr21:31075000-31100000,
chr21:29475000-29500000~~chr21:31075000-31100000,
chr21:30025000-30050000~~chr21:31075000-31100000,
chr21:30050000-30075000~~chr21:31075000-31100000,
chr21:30250000-30275000~~chr21:31050000-31075000,
chr21:30325000-30350000~~chr21:31075000-31100000,
chr21:30425000-30450000~~chr21:31075000-31100000,
chr21:30475000-30500000~~chr21:31075000-31100000,
chr21:30500000-30525000~~chr21:31050000-31075000,
chr21:30500000-30525000~~chr21:31075000-31100000,
chr21:30825000-30850000~~chr21:31050000-31075000,
chr21:30825000-30850000~~chr21:31075000-31100000,
chr21:30850000-30875000~~chr21:31075000-31100000,
chr21:30950000-30975000~~chr21:31075000-31100000,
chr21:31075000-31100000~~chr21:31175000-31200000,
chr21:31075000-31100000~~chr21:31325000-31350000,
chr21:31075000-31100000~~chr21:31375000-31400000,
chr21:31075000-31100000~~chr21:31450000-31475000,
chr21:31075000-31100000~~chr21:31575000-31600000,
chr21:31075000-31100000~~chr21:31600000-31625000,