- Basic information
- CohesinDB ID: CDBP00416464
- Locus: chr21-31103314-31103877
-
Data sourse: GSE98367
-
Cell type: Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 59%,
"7_Enh": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: YBX1, POU2F2, CHD8, MEF2B, SMC1A, POU5F1, NKX2-2, XBP1, GTF2B, FOXA1, ERG3, ERG2, HOXB13, ERG, RELA, MYC, ARNT, GRHL3, GABPA, MED1, KLF4, NR3C1, TRIM28, MYB, KMT2A, EZH2, LMO2, ELF3, SPI1, BAF155, NR4A1, AR, ZNF257, HDAC2, GATA2, IRF4, BRD4, FOXP1, EED
- Target gene symbol (double-evidenced CRMs): MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000159055,
- Related loop:
chr21:28750000-28775000~~chr21:31075000-31100000,
chr21:28775000-28800000~~chr21:31075000-31100000,
chr21:29075000-29100000~~chr21:31075000-31100000,
chr21:29100000-29125000~~chr21:31075000-31100000,
chr21:29350000-29375000~~chr21:31075000-31100000,
chr21:29375000-29400000~~chr21:31075000-31100000,
chr21:29475000-29500000~~chr21:31075000-31100000,
chr21:30025000-30050000~~chr21:31075000-31100000,
chr21:30050000-30075000~~chr21:31075000-31100000,
chr21:30325000-30350000~~chr21:31075000-31100000,
chr21:30425000-30450000~~chr21:31075000-31100000,
chr21:30475000-30500000~~chr21:31075000-31100000,
chr21:30500000-30525000~~chr21:31075000-31100000,
chr21:30825000-30850000~~chr21:31075000-31100000,
chr21:30850000-30875000~~chr21:31075000-31100000,
chr21:30950000-30975000~~chr21:31075000-31100000,
chr21:31075000-31100000~~chr21:31175000-31200000,
chr21:31075000-31100000~~chr21:31325000-31350000,
chr21:31075000-31100000~~chr21:31375000-31400000,
chr21:31075000-31100000~~chr21:31450000-31475000,
chr21:31075000-31100000~~chr21:31575000-31600000,
chr21:31075000-31100000~~chr21:31600000-31625000,
chr21:31097524-31100200~~chr21:31142192-31143682,
chr21:31097524-31100200~~chr21:31179837-31181523,
chr21:31097524-31100200~~chr21:31580135-31582040,
chr21:31097524-31100200~~chr21:31603561-31606243,
chr21:31097635-31100206~~chr21:31179733-31181943,
chr21:31097635-31100206~~chr21:31579465-31582225,
chr21:31097635-31100206~~chr21:31603602-31605948,
chr21:31097651-31099664~~chr21:31180070-31181408,
chr21:31097659-31100122~~chr21:31142126-31143686,
chr21:31097659-31100122~~chr21:31179749-31181978,
chr21:31097659-31100122~~chr21:31603531-31606025,
chr21:31097662-31099856~~chr21:31603619-31605810,
chr21:31097665-31099883~~chr21:31179820-31181485,
chr21:31097665-31099883~~chr21:31603773-31605883,
chr21:31097675-31100213~~chr21:31179786-31181766,
chr21:31097685-31100223~~chr21:31179725-31181960,
chr21:31097685-31100223~~chr21:31603435-31606015,
chr21:31097693-31099837~~chr21:31603761-31605998,
chr21:31097698-31099915~~chr21:31179762-31181496,
chr21:31097698-31099915~~chr21:31603571-31605761,
chr21:31097703-31099820~~chr21:31603740-31605904,
chr21:31097825-31099965~~chr21:31179895-31181473,
chr21:31097825-31099965~~chr21:31604036-31605562,
chr21:31097828-31099837~~chr21:31179837-31181676,
chr21:31097828-31099837~~chr21:31603469-31605983,
chr21:31097834-31100105~~chr21:31142031-31143645,
chr21:31097834-31100105~~chr21:31179767-31181764,
chr21:31097834-31100105~~chr21:31579897-31582091,
chr21:31097834-31100105~~chr21:31603560-31606026,
chr21:31097840-31099913~~chr21:31179591-31181602,
chr21:31097840-31099933~~chr21:31142156-31143409,
chr21:31097840-31099933~~chr21:31179984-31181987,
chr21:31097840-31099933~~chr21:31580266-31581665,
chr21:31097840-31099933~~chr21:31604013-31605728,
chr21:31097840-31099938~~chr21:31179884-31181375,
chr21:31097840-31099938~~chr21:31603779-31605751,
chr21:31097847-31099741~~chr21:31179752-31181752,
chr21:31097847-31099741~~chr21:31603808-31605732,
chr21:31097850-31099840~~chr21:31579942-31582140,
chr21:31097852-31099834~~chr21:31179993-31181603,
chr21:31097852-31099834~~chr21:31580297-31581620,
chr21:31097852-31099834~~chr21:31603977-31605609,
chr21:31097852-31100234~~chr21:31603563-31605907,
chr21:31097853-31099955~~chr21:31179971-31181817,
chr21:31097866-31100218~~chr21:31179704-31181750,
chr21:31097866-31100218~~chr21:31579948-31582262,
chr21:31097866-31100218~~chr21:31603484-31605864,
chr21:31097869-31099852~~chr21:31603478-31605998,
chr21:31097870-31099669~~chr21:31603921-31605829,
chr21:31097873-31099839~~chr21:31603801-31605813,
chr21:31097877-31099898~~chr21:31179824-31181444,
chr21:31097877-31099898~~chr21:31579888-31581990,
chr21:31097877-31099898~~chr21:31603659-31605983,
chr21:31097883-31100039~~chr21:31179697-31181922,
chr21:31097883-31100039~~chr21:31603595-31606017,
chr21:31097887-31099829~~chr21:31179855-31181435,
chr21:31097887-31099865~~chr21:31179702-31181755,
chr21:31097887-31099865~~chr21:31603607-31605876,
chr21:31097887-31099866~~chr21:31603648-31605747,
chr21:31097887-31099870~~chr21:31179832-31181897,
chr21:31097887-31099870~~chr21:31580194-31582043,
chr21:31097892-31099900~~chr21:31179769-31181792,
chr21:31097892-31099900~~chr21:31580250-31582117,
chr21:31097893-31100303~~chr21:31179706-31181949,
chr21:31097893-31100303~~chr21:31579468-31582178,
chr21:31097893-31100303~~chr21:31603591-31605976,
chr21:31097894-31099945~~chr21:31603826-31605735,
chr21:31097896-31099782~~chr21:31142212-31143628,
chr21:31097896-31099782~~chr21:31179835-31181470,
chr21:31097896-31099782~~chr21:31603800-31605717,
chr21:31097903-31099685~~chr21:31603616-31605759,
chr21:31097906-31099678~~chr21:31180055-31181588,
chr21:31097906-31099678~~chr21:31579982-31581802,
chr21:31097906-31099678~~chr21:31603705-31605771,
chr21:31097906-31100239~~chr21:31179824-31181763,
chr21:31097906-31100239~~chr21:31580303-31582255,
chr21:31097906-31100239~~chr21:31603767-31606045,
chr21:31097923-31099913~~chr21:31179767-31181689,
chr21:31097923-31099913~~chr21:31603790-31605769,
chr21:31097936-31099894~~chr21:31603758-31605876,
chr21:31097941-31100177~~chr21:31179879-31181642,
chr21:31097941-31100177~~chr21:31580284-31581629,
chr21:31097941-31100177~~chr21:31603985-31605548,
chr21:31097943-31100132~~chr21:31179993-31181674,
chr21:31097943-31100132~~chr21:31580278-31581642,
chr21:31097943-31100132~~chr21:31604008-31605560,
chr21:31097962-31099613~~chr21:31180019-31181392,
chr21:31097962-31099613~~chr21:31580269-31582062,
chr21:31097968-31099503~~chr21:31179934-31181426,
chr21:31097976-31099983~~chr21:31179818-31181407,
chr21:31097982-31099419~~chr21:31179870-31181422,
chr21:31097986-31099396~~chr21:31180102-31181374,
chr21:31098003-31099384~~chr21:31604127-31605513,
chr21:31098023-31099887~~chr21:31180055-31181418,
chr21:31098023-31099887~~chr21:31604024-31605520,
chr21:31100000-31125000~~chr21:31575000-31600000,
chr21:31100000-31125000~~chr21:31600000-31625000,
chr21:31100000-31125000~~chr21:32250000-32275000,
chr21:31100000-31125000~~chr21:32800000-32825000,
chr21:31108225-31109947~~chr21:31603740-31605904,
chr21:31108228-31109954~~chr21:31141372-31143715,
chr21:31108228-31109954~~chr21:31179697-31181922,
chr21:31108237-31110143~~chr21:31179749-31181978,
chr21:31108237-31110143~~chr21:31579669-31582192,
chr21:31108247-31110001~~chr21:31142031-31143645,
chr21:31108247-31110001~~chr21:31179767-31181764,
chr21:31108247-31110001~~chr21:31579897-31582091,
chr21:31108247-31110001~~chr21:31603560-31606026,
chr21:31108253-31109958~~chr21:31179725-31181960,
chr21:31108253-31109964~~chr21:31179752-31181752,
chr21:31108255-31109956~~chr21:31179733-31181943,
chr21:31108264-31109975~~chr21:31142192-31143682,
chr21:31108300-31109854~~chr21:31579888-31581990,
chr21:31108302-31109934~~chr21:31603591-31605976,
chr21:31108349-31109945~~chr21:31603460-31605984,
chr21:31108353-31109891~~chr21:31179855-31181435,
chr21:31108376-31109926~~chr21:31603651-31605924,
chr21:31108400-31109986~~chr21:31612358-31613962,
chr21:31108420-31109889~~chr21:31603648-31605747,
chr21:31108511-31109905~~chr21:31179984-31181987,