- Basic information
- CohesinDB ID: CDBP00416466
- Locus: chr21-31112340-31112482
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 61%,
"5_TxWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, PAX3-FOXO1, CHD8, ZSCAN16, CLOCK
- Target gene symbol (double-evidenced CRMs): MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000159055,
- Related loop:
chr21:31100000-31125000~~chr21:31575000-31600000,
chr21:31100000-31125000~~chr21:31600000-31625000,
chr21:31100000-31125000~~chr21:32250000-32275000,
chr21:31100000-31125000~~chr21:32800000-32825000,
chr21:31108225-31109947~~chr21:31603740-31605904,
chr21:31108228-31109954~~chr21:31141372-31143715,
chr21:31108228-31109954~~chr21:31179697-31181922,
chr21:31108237-31110143~~chr21:31179749-31181978,
chr21:31108237-31110143~~chr21:31579669-31582192,
chr21:31108247-31110001~~chr21:31142031-31143645,
chr21:31108247-31110001~~chr21:31179767-31181764,
chr21:31108247-31110001~~chr21:31579897-31582091,
chr21:31108247-31110001~~chr21:31603560-31606026,
chr21:31108253-31109958~~chr21:31179725-31181960,
chr21:31108253-31109964~~chr21:31179752-31181752,
chr21:31108255-31109956~~chr21:31179733-31181943,
chr21:31108264-31109975~~chr21:31142192-31143682,
chr21:31108300-31109854~~chr21:31579888-31581990,
chr21:31108302-31109934~~chr21:31603591-31605976,
chr21:31108349-31109945~~chr21:31603460-31605984,
chr21:31108353-31109891~~chr21:31179855-31181435,
chr21:31108376-31109926~~chr21:31603651-31605924,
chr21:31108400-31109986~~chr21:31612358-31613962,
chr21:31108420-31109889~~chr21:31603648-31605747,
chr21:31108511-31109905~~chr21:31179984-31181987,