- Basic information
- CohesinDB ID: CDBP00416467
- Locus: chr21-31115256-31115414
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 56%,
"5_TxWk": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CHD8, CBX1, MAFG, EBF1, TOP2A, PAF1, ZFX, CRY1, DUX4, SMAD3, FOXA1, ZNF596, RELA, ZNF384, RAD21, PBX4, HIF1A, GRHL3, NKX2-1, GATA3, SPIB, FOS, NFE2, NR3C1, CREB1, TFAP2C, NFE2L2, EZH2, ESR1, PKNOX1, GRHL2, CTCF, MAFK, EP300, SPI1, AR, DPF2, HDAC2, GATA2, NCOR1, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): TIAM1,MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops