- Basic information
- CohesinDB ID: CDBP00416468
- Locus: chr21-31116488-31118341
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Data sourse: ENCSR000BLD, ENCSR000BSB, ENCSR000BLY, GSE105028, GSE103477, GSE131606, GSE25021, ENCSR000EFJ, ENCSR000BTU, GSE86191, GSE138405, GSE101921, GSE206145-NatGen2015, GSE130135, GSE116344, GSE94872, GSE98367, GSE206145, GSE85526, ENCSR000ECE, ENCSR000EHX, GSE97394, GSE110061, GSE129526, ENCSR000HPG, GSE111913, GSE68388, GSE83726, GSE50893
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Cell type: MDM, RH4, HuCC-T1, H9-hESC, RPE, HMEC, Fibroblast, HEKn, Ishikawa, IMR-90, DKO, H1-hESC, GM2588, SK-N-SH, RT-112, Macrophage, HUES64, MCF-7, GM12892, Hela-Kyoto, HCT-116, HEK293T, HUVEC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 11% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.744
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 35%,
"15_Quies": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, ZNF675, NME2, FOXA1, SUZ12, LEO1, MLL4, ATF3, NFIC, CHD7, ZNF467, MAF, TEAD1, ZNF121, KLF6, ESR1, CTCF, TCF12, JUN, EP300, E2F1, TEAD4, TFAP2C, CHD8, POU5F1, ZSCAN21, ZBTB48, STAT1, SRF, HOXC5, ZBTB21, ZNF585B, MYC, SMARCA4, RAD21, PROX1, NKX2-1, RXRA, BATF3, STAT3, RCOR1, ARNTL, NR3C1, CCAR2, EZH2, GRHL2, SPI1, FLI1, MRTFB, ZNF554, SMC1A, ZFX, SMAD3, ZNF654, ERG3, SMARCC1, PRDM10, CREBBP, RUNX2, ZNF184, PBX4, ARNT, PBX3, FOS, CDK8, MED1, MYB, SP1, BCL11A, PHIP, SMC3, STAG1, PAF1, ZNF692, KDM1A, RELA, JUNB, HIF1A, GATA3, BATF, TAL1, MAX, ZFP69B, KLF4, SP7, TP53, T, BRD2, TBX21, BHLHE40, AR, NOTCH3, BRD4, JUND, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): TIAM1,MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops