- Basic information
- CohesinDB ID: CDBP00416469
- Locus: chr21-31120255-31120833
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Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE105028, GSE206145-NatGen2015, GSE206145
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Cell type: RPE, H1-hESC, Fibroblast, HCT-116, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 36%,
"4_Tx": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF468, MYCN, POU5F1, ZFX, ZBTB48, WT1, ZNF205, TET2, SUZ12, YY1, RELA, MYC, ZBTB5, MCM3, SP140, GRHL3, PRDM9, CBX2, EZH2, LMO2, OCA2, CTCF, BCL11A, PAX3-FOXO1, NCOR1, BRD4, MAZ, AATF, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): TIAM1,MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 456
- Number of somatic mutations (non-coding): 152
- Related genes and loops