- Basic information
- CohesinDB ID: CDBP00416471
- Locus: chr21-31125565-31125905
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Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 54%,
"15_Quies": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PAX7, NANOG, SMC1A, CBFA2T2, CEBPA, POU2F2, BRD1, RUNX1T1, SOX2, ZFX, BCL6, XBP1, MYCN, SMAD3, ZSCAN5A, ZBTB48, STAT1, WT1, FOXA1, MEF2C, ERG3, CDK9, ERG, YY1, RELA, ZNF384, MYC, SMAD2, EOMES, CHD7, PRDM1, GRHL3, RAD21, SP140, RXRA, OTX2, ARNT, GABPA, SMAD4, MAX, PAX5, SPIB, ZNF143, CDK8, TERF2, CEBPB, TERF1, TRIM28, MYB, SCRT2, EZH2, CHD8, ESR1, TP53, ZNF334, JUN, TCF12, CTCF, SPI1, BCL11A, PSIP1, NFATC1, AR, T, FOXA2, RXR, GATA2, TRIM24, SIX2, FLI1, NOTCH3, BRD4, CLOCK, MAZ, SMC3
- Target gene symbol (double-evidenced CRMs): MIS18A,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops