- Basic information
- CohesinDB ID: CDBP00416472
- Locus: chr21-31132822-31133809
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Data sourse: GSE93080, ENCSR000EAC, ENCSR000DZP, GSE67783, GSE86191, GSE98367, ENCSR000EHX, GSE50893, GSE73207
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Cell type: Macrophage, HCT-116, SNYDER, TF-1, GM12878, GM12891, SK-N-SH, HSPC, GM18486
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 26%,
"7_Enh": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, CBX5, XBP1, HDGF, RUNX3, CBFB, PAX5, MAF, JMJD1C, KLF5, ELF1, TRIM28, BCLAF1, LMO2, ESR1, TP73, CTCF, SND1, TCF12, EP300, ARID5B, LMO1, DPF2, IRF4, TRIM24, RAD51, RBPJ, POU2F2, CHD8, BRD1, ZNF263, MYCN, TOP2A, CDK7, RUNX1T1, MTA2, ZSCAN5A, SRF, NBN, ERG, PBX1, ASCL1, ZNF341, MYC, SMARCA4, GABPA, IKZF1, RCOR1, ARNTL, VDR, NR3C1, CEBPB, STAT5B, KMT2A, EZH2, SPI1, FLI1, SMARCA5, RELB, RUNX1, SMC1A, BCL6, CEBPA, CRY1, AFF4, ZFX, TRIM22, TWIST1, MEF2A, NOTCH1, RUNX2, ATF2, PBX3, ETV6, SUPT5H, CDK8, MED1, TERF1, MYB, SMAD1, STAT5A, MAFK, SP1, BCL11A, NIPBL, NR4A1, USF1, REST, ATF7, ASH2L, TCF3, FOXP1, MLLT1, STAG1, NFATC3, MEF2B, TBL1X, EBF1, MEIS1, E2F8, GTF2B, MEF2C, CDK9, KDM1A, YY1, RELA, TARDBP, ZFP36, SKIL, GATA3, BATF, TAL1, MAX, ZNF143, GATA1, HAND2, BCL11B, NR2F1, TCF7L2, ZNF687, PKNOX1, TP53, MED, TBX21, BHLHE40, HSF1, NOTCH3, IKZF2, BRD4, ZNF24, RUNX1-3
- Target gene symbol (double-evidenced CRMs): MIS18A,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 27
- Number of somatic mutations (non-coding): 9
- Related genes and loops