- Basic information
- CohesinDB ID: CDBP00416483
- Locus: chr21-31162086-31162400
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Data sourse: GSE206145, ENCSR000DZP, ENCSR000BLY
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Cell type: GM12878, SK-N-SH, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 41%,
"5_TxWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, MEF2B, CHD2, MTA2, STAT1, NFXL1, NBN, TRIM22, KDM1A, MEF2A, TARDBP, NOTCH1, ZNF184, ZFP36, SKIL, ARNT, BATF, MAX, PAX5, ZNF143, IKZF1, RCOR1, NR3C1, ELF1, ZMYM3, ZNF768, NR2F1, ZNF217, ZNF687, MLLT1, TCF12, BCL11A, SPI1, TBX21, BHLHE40, DPF2, HDAC2, RBM25, TRIM24, ATF7, IKZF2, SMARCA5, BCOR, RELB, ZNF24, ADNP, RBPJ
- Target gene symbol (double-evidenced CRMs): MIS18A,BACH1,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000156273,
ENSG00000156299,
ENSG00000159055,
- Related loop:
chr21:29275000-29300000~~chr21:31150000-31175000,
chr21:30675000-30700000~~chr21:31150000-31175000,
chr21:31000000-31025000~~chr21:31150000-31175000,
chr21:31150000-31175000~~chr21:31250000-31275000,
chr21:31150000-31175000~~chr21:31375000-31400000,
chr21:31150000-31175000~~chr21:31575000-31600000,
chr21:31150000-31175000~~chr21:32250000-32275000,