- Basic information
- CohesinDB ID: CDBP00416484
- Locus: chr21-31162855-31163109
-
Data sourse: ENCSR000EHW, GSE206145-NatGen2015, ENCSR000EHX, ENCSR000BLY
-
Cell type: Fibroblast, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SMC3,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 44%,
"5_TxWk": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: MYCN, ZNF335, ZNF600, SMAD3, FOXA1, ZNF770, TWIST1, ZNF184, RAD21, DAXX, ATF2, GATA3, MAX, NRIP1, FOS, RCOR1, HAND2, ZNF629, CREB1, ESR1, ZBTB6, EBF3, TCF12, EP300, AR, MXI1, BRD4, JUND, PRDM6, ZNF554, TFAP2C, FOSL2
- Target gene symbol (double-evidenced CRMs): TIAM1,MIS18A,BACH1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156273,
ENSG00000156299,
ENSG00000159055,
- Related loop:
chr21:29275000-29300000~~chr21:31150000-31175000,
chr21:30675000-30700000~~chr21:31150000-31175000,
chr21:31000000-31025000~~chr21:31150000-31175000,
chr21:31150000-31175000~~chr21:31250000-31275000,
chr21:31150000-31175000~~chr21:31375000-31400000,
chr21:31150000-31175000~~chr21:31575000-31600000,
chr21:31150000-31175000~~chr21:32250000-32275000,