- Basic information
- CohesinDB ID: CDBP00416490
- Locus: chr21-31177999-31183023
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, GSE130140, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, HSPC, CUTLL1, CVI-hiPSC, Liver, GP5d, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, Neurons-H1, A-549, HUVEC, GM19238, HeLa, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 63% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.267
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 31%,
"15_Quies": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, BCL6, PGR, CEBPA, MYCN, SMC1A, CHD2, PAF1, TOP2A, ZFX, ZBTB48, WT1, STAT1, FOXA1, DDX5, CDK9, ZNF300, KDM1A, ZNF19, ERG, RELA, ZNF384, ZNF341, EOMES, RAD21, ARNT, GRHL3, GATA3, TAL1, PBX3, GATA1, IKZF1, RCOR1, HAND2, VDR, JMJD1C, CEBPB, MAF, TRIM28, KMT2A, SCRT2, TCF7L2, MYB, EZH2, LMO2, ESR1, MLL, PITX3, EBF3, CTCF, TCF12, EP300, SPI1, BCL11A, NR4A1, AR, PAX3-FOXO1, GATA6, ZBTB16, NKX2-5, GATA2, RBM25, MAML3, BRD4, SCRT1
- Target gene symbol (double-evidenced CRMs): TIAM1,CFAP298-TCP10L,MIS18A,CFAP298
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 168
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000159055,
ENSG00000265590,
ENSG00000159079,
- Related loop:
chr21:29075000-29100000~~chr21:31175000-31200000,
chr21:29275000-29300000~~chr21:31150000-31175000,
chr21:30257134-30259115~~chr21:31179827-31181941,
chr21:30675000-30700000~~chr21:31150000-31175000,
chr21:31000000-31025000~~chr21:31150000-31175000,
chr21:31075000-31100000~~chr21:31175000-31200000,
chr21:31097524-31100200~~chr21:31179837-31181523,
chr21:31097635-31100206~~chr21:31179733-31181943,
chr21:31097651-31099664~~chr21:31180070-31181408,
chr21:31097659-31100122~~chr21:31179749-31181978,
chr21:31097665-31099883~~chr21:31179820-31181485,
chr21:31097675-31100213~~chr21:31179786-31181766,
chr21:31097685-31100223~~chr21:31179725-31181960,
chr21:31097698-31099915~~chr21:31179762-31181496,
chr21:31097825-31099965~~chr21:31179895-31181473,
chr21:31097828-31099837~~chr21:31179837-31181676,
chr21:31097834-31100105~~chr21:31179767-31181764,
chr21:31097840-31099913~~chr21:31179591-31181602,
chr21:31097840-31099933~~chr21:31179984-31181987,
chr21:31097840-31099938~~chr21:31179884-31181375,
chr21:31097847-31099741~~chr21:31179752-31181752,
chr21:31097852-31099834~~chr21:31179993-31181603,
chr21:31097853-31099955~~chr21:31179971-31181817,
chr21:31097866-31100218~~chr21:31179704-31181750,
chr21:31097877-31099898~~chr21:31179824-31181444,
chr21:31097883-31100039~~chr21:31179697-31181922,
chr21:31097887-31099829~~chr21:31179855-31181435,
chr21:31097887-31099865~~chr21:31179702-31181755,
chr21:31097887-31099870~~chr21:31179832-31181897,
chr21:31097892-31099900~~chr21:31179769-31181792,
chr21:31097893-31100303~~chr21:31179706-31181949,
chr21:31097896-31099782~~chr21:31179835-31181470,
chr21:31097906-31099678~~chr21:31180055-31181588,
chr21:31097906-31100239~~chr21:31179824-31181763,
chr21:31097923-31099913~~chr21:31179767-31181689,
chr21:31097941-31100177~~chr21:31179879-31181642,
chr21:31097943-31100132~~chr21:31179993-31181674,
chr21:31097962-31099613~~chr21:31180019-31181392,
chr21:31097968-31099503~~chr21:31179934-31181426,
chr21:31097976-31099983~~chr21:31179818-31181407,
chr21:31097982-31099419~~chr21:31179870-31181422,
chr21:31097986-31099396~~chr21:31180102-31181374,
chr21:31098023-31099887~~chr21:31180055-31181418,
chr21:31108228-31109954~~chr21:31179697-31181922,
chr21:31108237-31110143~~chr21:31179749-31181978,
chr21:31108247-31110001~~chr21:31179767-31181764,
chr21:31108253-31109958~~chr21:31179725-31181960,
chr21:31108253-31109964~~chr21:31179752-31181752,
chr21:31108255-31109956~~chr21:31179733-31181943,
chr21:31108353-31109891~~chr21:31179855-31181435,
chr21:31108511-31109905~~chr21:31179984-31181987,
chr21:31150000-31175000~~chr21:31250000-31275000,
chr21:31150000-31175000~~chr21:31375000-31400000,
chr21:31150000-31175000~~chr21:31575000-31600000,
chr21:31150000-31175000~~chr21:32250000-32275000,
chr21:31175000-31200000~~chr21:31325000-31350000,
chr21:31175000-31200000~~chr21:31400000-31425000,
chr21:31175000-31200000~~chr21:31450000-31475000,
chr21:31175000-31200000~~chr21:31500000-31525000,
chr21:31175000-31200000~~chr21:31550000-31575000,
chr21:31175000-31200000~~chr21:31575000-31600000,
chr21:31175000-31200000~~chr21:31600000-31625000,
chr21:31175000-31200000~~chr21:32250000-32275000,
chr21:31175000-31200000~~chr21:32575000-32600000,
chr21:31179704-31181750~~chr21:31603484-31605864,
chr21:31179749-31181978~~chr21:31579669-31582192,
chr21:31179749-31181978~~chr21:31603531-31606025,
chr21:31179770-31181885~~chr21:31603563-31605907,
chr21:31179837-31181523~~chr21:31580135-31582040,
chr21:31179884-31181375~~chr21:31579988-31582000,