- Basic information
- CohesinDB ID: CDBP00416493
- Locus: chr21-31188916-31189109
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Data sourse: ENCSR000BLD, GSE25021
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Cell type: MCF-7, H1-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 44%,
"15_Quies": 44%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, ZNF496, ZSCAN5C, SOX2, NME2, XBP1, FOXA1, SUZ12, ZFHX2, TFAP4, HDGF, NFIC, ZNF362, CHD7, PRDM1, ZBTB44, IKZF3, RUNX3, ZNF189, PAX5, MAF, TEAD1, ZNF121, LMO2, ESR1, OCA2, ZNF217, ZNF561, CTCF, TCF12, BAF155, EP300, GATA6, DPF2, IRF4, RAD51, TEAD4, FOXA3, GATAD2A, RBPJ, GLIS1, POU2F2, CHD8, NANOG, ZSCAN5D, POU5F1, TOP2A, ZNF778, MTA2, ZBTB48, ZSCAN5A, DUX4, SRF, NBN, ERG2, ARID3A, ERG, MYC, SMARCA4, EOMES, BATF3, PRDM14, IKZF1, NR3C1, ESRRA, STAT5B, KMT2A, EZH2, KLF8, GRHL2, FEZF1, TRPS1, SPI1, MIXL1, IRF1, GATA2, SIX2, ZGPAT, RELB, RUNX1, BCL6, CEBPA, NKX2-2, EZH2phosphoT487, SIN3A, ZFX, ERG3, CBX8, ZNF18, PRDM10, SMARCC1, MEF2A, CREBBP, ZNF384, ZNF35, RARA, GATA4, OSR2, ZNF184, PBX4, ARNT, ATF2, PRDM9, ZEB2, MED1, ZXDB, MYB, KLF9, ZNF22, MAFK, BCL11A, TFAP2A, NIPBL, ZNF479, OVOL3, ATF7, ASH2L, HOXA9, PHIP, TCF3, FOXP1, PRDM6, STAG1, NFATC3, MEF2B, FOXA2, MTA3, ZNF600, ZNF692, WT1, ZNF574, TCF7, HOXB13, KDM1A, YY1, RELA, TARDBP, NEUROD1, JUNB, HIF1A, SKIL, OTX2, GATA3, BATF, TAL1, MAX, ZNF143, TLE3, NR2F2, TCF7L2, PKNOX1, ZNF334, MYOD1, PHOX2B, ELF3, TBX21, BHLHE40, AR, ZNF324, ZBTB42, RNF2, NOTCH3, BRD4, IKZF2, JUND, ZNF316
- Target gene symbol (double-evidenced CRMs): MIS18A,CFAP298-TCP10L,TIAM1,CFAP298
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000159055,
ENSG00000265590,
ENSG00000159079,
- Related loop:
chr21:29075000-29100000~~chr21:31175000-31200000,
chr21:31075000-31100000~~chr21:31175000-31200000,
chr21:31175000-31200000~~chr21:31325000-31350000,
chr21:31175000-31200000~~chr21:31400000-31425000,
chr21:31175000-31200000~~chr21:31450000-31475000,
chr21:31175000-31200000~~chr21:31500000-31525000,
chr21:31175000-31200000~~chr21:31550000-31575000,
chr21:31175000-31200000~~chr21:31575000-31600000,
chr21:31175000-31200000~~chr21:31600000-31625000,
chr21:31175000-31200000~~chr21:32250000-32275000,
chr21:31175000-31200000~~chr21:32575000-32600000,