- Basic information
- CohesinDB ID: CDBP00416494
- Locus: chr21-31194439-31202575
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, GSE130140, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, HSPC, CUTLL1, Liver, GP5d, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, Ramos, GM19238, HeLa, CNCC-WT33iPSC, TC-71, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 76% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.200
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 31%,
"7_Enh": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF146, ZNF580, ZSCAN5C
- Target gene symbol (double-evidenced CRMs): HUNK,CFAP298-TCP10L,MIS18A,TIAM1,CFAP298
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 116
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000142149,
ENSG00000159055,
ENSG00000265590,
ENSG00000159079,
- Related loop:
chr21:29075000-29100000~~chr21:31175000-31200000,
chr21:31075000-31100000~~chr21:31175000-31200000,
chr21:31175000-31200000~~chr21:31325000-31350000,
chr21:31175000-31200000~~chr21:31400000-31425000,
chr21:31175000-31200000~~chr21:31450000-31475000,
chr21:31175000-31200000~~chr21:31500000-31525000,
chr21:31175000-31200000~~chr21:31550000-31575000,
chr21:31175000-31200000~~chr21:31575000-31600000,
chr21:31175000-31200000~~chr21:31600000-31625000,
chr21:31175000-31200000~~chr21:32250000-32275000,
chr21:31175000-31200000~~chr21:32575000-32600000,
chr21:31197237-31199506~~chr21:31603761-31605998,
chr21:31197303-31199956~~chr21:31579716-31582232,
chr21:31197303-31199956~~chr21:31603460-31605984,
chr21:31197589-31199959~~chr21:31565573-31567413,
chr21:31197589-31199959~~chr21:31579694-31582345,
chr21:31197589-31199959~~chr21:31603435-31606015,
chr21:31197601-31199886~~chr21:31579888-31581990,
chr21:31197601-31199886~~chr21:31603659-31605983,
chr21:31197619-31199531~~chr21:31579897-31582091,
chr21:31197619-31199531~~chr21:31603560-31606026,
chr21:31197637-31199884~~chr21:31579948-31582262,
chr21:31197637-31199884~~chr21:31603484-31605864,
chr21:31197648-31199955~~chr21:31457221-31458650,
chr21:31197648-31199955~~chr21:31579675-31582027,
chr21:31197648-31199955~~chr21:31603571-31605761,
chr21:31197650-31199906~~chr21:31579603-31582110,
chr21:31197650-31199906~~chr21:31603651-31605924,
chr21:31197654-31199860~~chr21:31579713-31581888,
chr21:31197654-31199860~~chr21:31603573-31605798,
chr21:31197655-31199851~~chr21:31476181-31477425,
chr21:31197655-31199851~~chr21:31579669-31582192,
chr21:31197655-31199851~~chr21:31603531-31606025,
chr21:31197672-31199795~~chr21:31579942-31582140,
chr21:31197672-31199906~~chr21:31579887-31581827,
chr21:31197672-31199906~~chr21:31603773-31605883,
chr21:31197678-31199846~~chr21:31579933-31582098,
chr21:31197678-31199846~~chr21:31603607-31605876,
chr21:31197682-31199946~~chr21:31579685-31582206,
chr21:31197682-31199946~~chr21:31603563-31605907,
chr21:31197714-31199904~~chr21:31579465-31582225,
chr21:31197714-31199904~~chr21:31603602-31605948,
chr21:31197715-31199809~~chr21:31580194-31582043,
chr21:31197715-31199809~~chr21:31603496-31605683,
chr21:31197719-31199532~~chr21:31579927-31581928,
chr21:31197719-31199532~~chr21:31603914-31605899,
chr21:31197719-31199951~~chr21:31580078-31581831,
chr21:31197724-31199535~~chr21:31476150-31477302,
chr21:31197724-31199535~~chr21:31579971-31581879,
chr21:31197724-31199535~~chr21:31603800-31605717,
chr21:31197728-31199477~~chr21:31579906-31582229,
chr21:31197729-31199566~~chr21:31603591-31605976,
chr21:31197736-31199514~~chr21:31580303-31582255,
chr21:31197736-31199514~~chr21:31603767-31606045,
chr21:31197737-31199840~~chr21:31579969-31582067,
chr21:31197737-31199840~~chr21:31603478-31605998,
chr21:31197748-31199515~~chr21:31343168-31345036,
chr21:31197748-31199515~~chr21:31508678-31510577,
chr21:31197748-31199515~~chr21:31565524-31567074,
chr21:31197748-31199515~~chr21:31579866-31581909,
chr21:31197748-31199515~~chr21:31603808-31605732,
chr21:31197752-31199500~~chr21:31579982-31582002,
chr21:31197752-31199500~~chr21:31603826-31605735,
chr21:31197753-31199935~~chr21:31565273-31566860,
chr21:31197753-31199935~~chr21:31579918-31582232,
chr21:31197753-31199935~~chr21:31603595-31606017,
chr21:31197755-31199442~~chr21:31580269-31582062,
chr21:31197755-31199442~~chr21:31603818-31605771,
chr21:31197756-31199452~~chr21:31603885-31605723,
chr21:31197757-31199878~~chr21:31580272-31582143,
chr21:31197757-31199878~~chr21:31603790-31605769,
chr21:31197757-31199907~~chr21:31579982-31581802,
chr21:31197757-31199907~~chr21:31603705-31605771,
chr21:31197758-31199504~~chr21:31580236-31582001,
chr21:31197763-31199891~~chr21:31579856-31582159,
chr21:31197763-31199891~~chr21:31603469-31605983,
chr21:31197765-31199962~~chr21:31580135-31582040,
chr21:31197765-31199962~~chr21:31603561-31606243,
chr21:31197767-31199871~~chr21:31580046-31581718,
chr21:31197780-31199473~~chr21:31580127-31582056,
chr21:31197780-31199473~~chr21:31603619-31605810,
chr21:31197780-31199925~~chr21:31580294-31582140,
chr21:31197780-31199925~~chr21:31603801-31605813,
chr21:31197787-31199879~~chr21:31579919-31581941,
chr21:31197787-31199879~~chr21:31603591-31605843,
chr21:31197799-31199453~~chr21:31580315-31581698,
chr21:31197801-31199880~~chr21:31580278-31581642,
chr21:31197801-31199880~~chr21:31604008-31605560,
chr21:31197807-31199502~~chr21:31580297-31581878,
chr21:31197807-31199502~~chr21:31604014-31605561,
chr21:31197808-31199851~~chr21:31580250-31582117,
chr21:31197808-31199851~~chr21:31603762-31606023,
chr21:31197818-31199455~~chr21:31603899-31605786,
chr21:31197869-31199761~~chr21:31580283-31581616,
chr21:31197883-31199835~~chr21:31580266-31581665,
chr21:31197883-31199835~~chr21:31604013-31605728,
chr21:31197888-31199879~~chr21:31580284-31581629,
chr21:31197888-31199879~~chr21:31603985-31605548,
chr21:31197890-31199733~~chr21:31580295-31581613,
chr21:31197890-31199733~~chr21:31604000-31605577,
chr21:31197901-31199794~~chr21:31580297-31581620,
chr21:31197901-31199794~~chr21:31603977-31605609,
chr21:31197910-31199531~~chr21:31603902-31605637,
chr21:31197925-31199613~~chr21:31580302-31581617,
chr21:31197925-31199613~~chr21:31604024-31605520,
chr21:31197954-31199538~~chr21:31604063-31605499,
chr21:31198011-31199951~~chr21:31579988-31582000,
chr21:31198011-31199951~~chr21:31603779-31605751,
chr21:31198078-31199477~~chr21:31603567-31605676,
chr21:31200000-31225000~~chr21:31300000-31325000,
chr21:31200000-31225000~~chr21:31325000-31350000,
chr21:31200000-31225000~~chr21:31375000-31400000,
chr21:31200000-31225000~~chr21:31400000-31425000,
chr21:31200000-31225000~~chr21:31425000-31450000,
chr21:31200000-31225000~~chr21:31450000-31475000,
chr21:31200000-31225000~~chr21:31550000-31575000,
chr21:31200000-31225000~~chr21:31575000-31600000,
chr21:31200000-31225000~~chr21:31600000-31625000,
chr21:31200000-31225000~~chr21:31850000-31875000,
chr21:31200000-31225000~~chr21:32250000-32275000,
chr21:31200000-31225000~~chr21:32800000-32825000,