- Basic information
- CohesinDB ID: CDBP00416495
- Locus: chr21-31203109-31204027
-
Data sourse: GSE86191, ENCSR000BSB, GSE129526, ENCSR000HPG, GSE206145, GSE206145-NatGen2015, GSE121355
-
Cell type: RPE, Fibroblast, HCT-116, HEK293T, IMR-90
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2,Mau2,SMC3
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 44%,
"5_TxWk": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: OGG1, GATA2, RUNX2, MTA2, PHIP, FOXA1, SMARCC1, BATF, PAX5, HOXB13, IKZF1
- Target gene symbol (double-evidenced CRMs): MIS18A,HUNK,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000142149,
ENSG00000159055,
- Related loop:
chr21:29075000-29100000~~chr21:31175000-31200000,
chr21:31075000-31100000~~chr21:31175000-31200000,
chr21:31175000-31200000~~chr21:31325000-31350000,
chr21:31175000-31200000~~chr21:31400000-31425000,
chr21:31175000-31200000~~chr21:31450000-31475000,
chr21:31175000-31200000~~chr21:31500000-31525000,
chr21:31175000-31200000~~chr21:31550000-31575000,
chr21:31175000-31200000~~chr21:31575000-31600000,
chr21:31175000-31200000~~chr21:31600000-31625000,
chr21:31175000-31200000~~chr21:32250000-32275000,
chr21:31175000-31200000~~chr21:32575000-32600000,
chr21:31197237-31199506~~chr21:31603761-31605998,
chr21:31197303-31199956~~chr21:31579716-31582232,
chr21:31197303-31199956~~chr21:31603460-31605984,
chr21:31197589-31199959~~chr21:31565573-31567413,
chr21:31197589-31199959~~chr21:31579694-31582345,
chr21:31197589-31199959~~chr21:31603435-31606015,
chr21:31197601-31199886~~chr21:31579888-31581990,
chr21:31197601-31199886~~chr21:31603659-31605983,
chr21:31197619-31199531~~chr21:31579897-31582091,
chr21:31197619-31199531~~chr21:31603560-31606026,
chr21:31197637-31199884~~chr21:31579948-31582262,
chr21:31197637-31199884~~chr21:31603484-31605864,
chr21:31197648-31199955~~chr21:31457221-31458650,
chr21:31197648-31199955~~chr21:31579675-31582027,
chr21:31197648-31199955~~chr21:31603571-31605761,
chr21:31197650-31199906~~chr21:31579603-31582110,
chr21:31197650-31199906~~chr21:31603651-31605924,
chr21:31197654-31199860~~chr21:31579713-31581888,
chr21:31197654-31199860~~chr21:31603573-31605798,
chr21:31197655-31199851~~chr21:31476181-31477425,
chr21:31197655-31199851~~chr21:31579669-31582192,
chr21:31197655-31199851~~chr21:31603531-31606025,
chr21:31197672-31199795~~chr21:31579942-31582140,
chr21:31197672-31199906~~chr21:31579887-31581827,
chr21:31197672-31199906~~chr21:31603773-31605883,
chr21:31197678-31199846~~chr21:31579933-31582098,
chr21:31197678-31199846~~chr21:31603607-31605876,
chr21:31197682-31199946~~chr21:31579685-31582206,
chr21:31197682-31199946~~chr21:31603563-31605907,
chr21:31197714-31199904~~chr21:31579465-31582225,
chr21:31197714-31199904~~chr21:31603602-31605948,
chr21:31197715-31199809~~chr21:31580194-31582043,
chr21:31197715-31199809~~chr21:31603496-31605683,
chr21:31197719-31199532~~chr21:31579927-31581928,
chr21:31197719-31199532~~chr21:31603914-31605899,
chr21:31197719-31199951~~chr21:31580078-31581831,
chr21:31197724-31199535~~chr21:31476150-31477302,
chr21:31197724-31199535~~chr21:31579971-31581879,
chr21:31197724-31199535~~chr21:31603800-31605717,
chr21:31197728-31199477~~chr21:31579906-31582229,
chr21:31197729-31199566~~chr21:31603591-31605976,
chr21:31197736-31199514~~chr21:31580303-31582255,
chr21:31197736-31199514~~chr21:31603767-31606045,
chr21:31197737-31199840~~chr21:31579969-31582067,
chr21:31197737-31199840~~chr21:31603478-31605998,
chr21:31197748-31199515~~chr21:31343168-31345036,
chr21:31197748-31199515~~chr21:31508678-31510577,
chr21:31197748-31199515~~chr21:31565524-31567074,
chr21:31197748-31199515~~chr21:31579866-31581909,
chr21:31197748-31199515~~chr21:31603808-31605732,
chr21:31197752-31199500~~chr21:31579982-31582002,
chr21:31197752-31199500~~chr21:31603826-31605735,
chr21:31197753-31199935~~chr21:31565273-31566860,
chr21:31197753-31199935~~chr21:31579918-31582232,
chr21:31197753-31199935~~chr21:31603595-31606017,
chr21:31197755-31199442~~chr21:31580269-31582062,
chr21:31197755-31199442~~chr21:31603818-31605771,
chr21:31197756-31199452~~chr21:31603885-31605723,
chr21:31197757-31199878~~chr21:31580272-31582143,
chr21:31197757-31199878~~chr21:31603790-31605769,
chr21:31197757-31199907~~chr21:31579982-31581802,
chr21:31197757-31199907~~chr21:31603705-31605771,
chr21:31197758-31199504~~chr21:31580236-31582001,
chr21:31197763-31199891~~chr21:31579856-31582159,
chr21:31197763-31199891~~chr21:31603469-31605983,
chr21:31197765-31199962~~chr21:31580135-31582040,
chr21:31197765-31199962~~chr21:31603561-31606243,
chr21:31197767-31199871~~chr21:31580046-31581718,
chr21:31197780-31199473~~chr21:31580127-31582056,
chr21:31197780-31199473~~chr21:31603619-31605810,
chr21:31197780-31199925~~chr21:31580294-31582140,
chr21:31197780-31199925~~chr21:31603801-31605813,
chr21:31197787-31199879~~chr21:31579919-31581941,
chr21:31197787-31199879~~chr21:31603591-31605843,
chr21:31197799-31199453~~chr21:31580315-31581698,
chr21:31197801-31199880~~chr21:31580278-31581642,
chr21:31197801-31199880~~chr21:31604008-31605560,
chr21:31197807-31199502~~chr21:31580297-31581878,
chr21:31197807-31199502~~chr21:31604014-31605561,
chr21:31197808-31199851~~chr21:31580250-31582117,
chr21:31197808-31199851~~chr21:31603762-31606023,
chr21:31197818-31199455~~chr21:31603899-31605786,
chr21:31197869-31199761~~chr21:31580283-31581616,
chr21:31197883-31199835~~chr21:31580266-31581665,
chr21:31197883-31199835~~chr21:31604013-31605728,
chr21:31197888-31199879~~chr21:31580284-31581629,
chr21:31197888-31199879~~chr21:31603985-31605548,
chr21:31197890-31199733~~chr21:31580295-31581613,
chr21:31197890-31199733~~chr21:31604000-31605577,
chr21:31197901-31199794~~chr21:31580297-31581620,
chr21:31197901-31199794~~chr21:31603977-31605609,
chr21:31197910-31199531~~chr21:31603902-31605637,
chr21:31197925-31199613~~chr21:31580302-31581617,
chr21:31197925-31199613~~chr21:31604024-31605520,
chr21:31197954-31199538~~chr21:31604063-31605499,
chr21:31198011-31199951~~chr21:31579988-31582000,
chr21:31198011-31199951~~chr21:31603779-31605751,
chr21:31198078-31199477~~chr21:31603567-31605676,
chr21:31200000-31225000~~chr21:31300000-31325000,
chr21:31200000-31225000~~chr21:31325000-31350000,
chr21:31200000-31225000~~chr21:31375000-31400000,
chr21:31200000-31225000~~chr21:31400000-31425000,
chr21:31200000-31225000~~chr21:31425000-31450000,
chr21:31200000-31225000~~chr21:31450000-31475000,
chr21:31200000-31225000~~chr21:31550000-31575000,
chr21:31200000-31225000~~chr21:31575000-31600000,
chr21:31200000-31225000~~chr21:31600000-31625000,
chr21:31200000-31225000~~chr21:31850000-31875000,
chr21:31200000-31225000~~chr21:32250000-32275000,
chr21:31200000-31225000~~chr21:32800000-32825000,