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Basic information

CohesinDB ID: CDBP00416496

Locus: chr21-31212597-31212933

Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783

Cell type: RPE, Fibroblast, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 54% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 50%, "15_Quies": 44%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CHD8, FOXA2, PAF1, ZFX, XBP1, DUX4, FOXA1, HOXB13, RELA, CREBBP, ZNF384, RUNX2, GRHL3, ATF4, NKX2-1, GABPA, STAT3, NRIP1, EZH2, ZNF22, AR, BRD4

Target gene symbol (double-evidenced CRMs): MIS18A,TIAM1,HUNK

Function elements

Human SNPs: .

Number of somatic mutations (coding): 6

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156299, ENSG00000142149, ENSG00000159055,

eachgene

Deatailed information for cohesin site CDBP00416496