Browse_each

Basic information

CohesinDB ID: CDBP00416500

Locus: chr21-31216371-31217225

Data sourse: GSE67783, GSE86191, GSE206145-NatGen2015, ENCSR153HNT, GSE68388

Cell type: Fibroblast, HCT-116, K-562, HSPC, HuCC-T1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.944

Subunit: SA1,Rad21,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 54% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 42%, "15_Quies": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: BRD1, ZFX, NME2, XBP1, ZBTB48, WT1, STAT1, FOXA1, SMARCC1, YY1, RELA, BRG1, SP140, HIF1A, TAL1, ZNF143, ZFP69B, EZH2, ESR1, OCA2, BHLHE40, PAX3-FOXO1, REST, NOTCH3, MAZ, SMC3, STAG1

Target gene symbol (double-evidenced CRMs): HUNK,MIS18A,TIAM1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 6

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156299, ENSG00000142149, ENSG00000159055,

eachgene

Deatailed information for cohesin site CDBP00416500