- Basic information
- CohesinDB ID: CDBP00416504
- Locus: chr21-31225761-31225988
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 50%,
"5_TxWk": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, ZNF263, ZFX, XBP1, WT1, RELA, ONECUT1, PRDM1, GRHL3, NKX2-1, ZNF143, MED1, EZH2, ESR1, SPI1, EP300, AR, PAX8, NOTCH3, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 104
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
- Related loop:
chr21:31200000-31225000~~chr21:31300000-31325000,
chr21:31200000-31225000~~chr21:31325000-31350000,
chr21:31200000-31225000~~chr21:31375000-31400000,
chr21:31200000-31225000~~chr21:31400000-31425000,
chr21:31200000-31225000~~chr21:31425000-31450000,
chr21:31200000-31225000~~chr21:31450000-31475000,
chr21:31200000-31225000~~chr21:31550000-31575000,
chr21:31200000-31225000~~chr21:31575000-31600000,
chr21:31200000-31225000~~chr21:31600000-31625000,
chr21:31200000-31225000~~chr21:31850000-31875000,
chr21:31200000-31225000~~chr21:32250000-32275000,
chr21:31200000-31225000~~chr21:32800000-32825000,
chr21:31225000-31250000~~chr21:31325000-31350000,
chr21:31225000-31250000~~chr21:31575000-31600000,