- Basic information
- CohesinDB ID: CDBP00416525
- Locus: chr21-31290321-31290795
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Data sourse: GSE206145
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Cell type: RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 77%,
"5_TxWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NFATC3, POU2F2, MEF2B, SMC1A, FOXA2, POU5F1, ZSCAN5C, EBF1, ZNF534, MTA2, DUX4, MAFF, ZBTB48, FOXA1, DDX5, ARID3A, TRIM22, HOXB13, RELA, TARDBP, ZNF384, MYC, ZNF362, ARNT, GRHL3, SKIL, PBX4, NKX2-1, PRDM9, BATF, ZNF189, PAX5, ZNF10, SPIB, IKZF1, CDK8, FOS, MED1, TRIM28, SCRT2, EZH2, ZNF687, PKNOX1, SETDB1, ZNF22, CTCF, SPI1, BCL11A, TBX21, BHLHE40, SP1, EP300, AR, DPF2, GATA2, EGLN2, IRF4, GATAD2B, ATF7, TRIM24, HCFC1, IKZF2, BRD4, RELB, ZIM3
- Target gene symbol (double-evidenced CRMs): EVA1C,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops