- Basic information
- CohesinDB ID: CDBP00416528
- Locus: chr21-31293609-31296107
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Data sourse: ENCSR000EFJ, GSE67783, GSE86191, GSE131956, ENCSR000BSB, GSE98367, GSE129526, ENCSR000HPG, ENCSR000BLY, GSE206145, GSE206145-NatGen2015, GSE68388, GSE131606
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Cell type: RPE, Macrophage, Fibroblast, HCT-116, GBM39, IMR-90, SK-N-SH, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 10% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 54%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, SOX2, XBP1, FOXA1, MLL4, ZFHX2, TFAP4, ATF3, NFIC, CHD7, PAX5, MITF, MAF, TEAD1, TRIM28, KLF6, ETV1, NFE2L2, HNF1B, MED26, JUN, TCF12, EP300, SOX4, TRIM24, E2F1, TEAD4, PDX1, GLIS1, POU2F2, CHD8, MYCN, POU5F1, KDM4C, ZBTB48, STAT1, NBN, ERG2, ERG, HOXC5, ZNF341, MYC, SMARCA4, RAD21, FOXP2, GRHL3, PROX1, RXRA, NKX2-1, GABPA, STAT3, NKX3-1, IKZF1, RCOR1, ARNTL, VDR, NR3C1, CEBPB, EZH2, SPI1, EHF, IRF1, GATA2, ZNF644, FLI1, MRTFB, NCOA2, RUNX1, NKX2-2, AFF4, ZFX, SMAD3, TET2, ERG3, SMARCC1, RUNX2, DAXX, PBX4, NRF1, HMGB2, PRDM9, PBX3, FOXM1, FOS, CDK8, MED1, ZEB1, MAFK, BCL11A, NIPBL, SP1, NR4A1, REST, PHIP, SMC3, CBX3, FOXA2, EBF1, PAF1, ZNF600, WT1, YY1, RELA, TARDBP, JUNB, SP140, HIF1A, GATA3, BATF, MAX, ZNF143, KLF4, NCOA3, TCF7L2, KDM5B, TP53, ZNF334, NFKB1, EGR2, ELF3, BRD2, BHLHE40, AR, RXR, YAP1, EGR1, IKZF2, BRD4, JUND, NOTCH3, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): EVA1C,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 26
- Number of somatic mutations (non-coding): 0
- Related genes and loops