- Basic information
- CohesinDB ID: CDBP00416530
- Locus: chr21-31298480-31299818
-
Data sourse: ENCSR000EAC, ENCSR000DZP, ENCSR230ZWH, GSE86191, GSE98367, GSE206145, GSE120943, GSE50893, ENCSR917QNE
-
Cell type: HCT-116, Monocytes, GM12878, GM2588, Liver, Macrophage, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SMC1,Mau2,SMC3
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 70%,
"7_Enh": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NME2, XBP1, HNF1A, FOXA1, HDGF, PRDM1, PAX5, ZSCAN4, TP63, ZNF467, ZNF629, MAF, KLF6, ESR1, HNF1B, TP73, OCA2, CTCF, EP300, DPF2, RAD51, PDX1, POU2F2, CHD8, MTA2, DUX4, NBN, ARID3A, ZNF300, ZBTB21, MYC, ONECUT1, RAD21, GRHL3, RXRA, NKX3-1, IKZF1, RCOR1, ZNF639, ARNTL, ZNF750, NR3C1, CEBPB, CREB1, EZH2, KLF8, SPI1, IRF1, GATA2, SMARCA5, RELB, SMC1A, CEBPA, NKX2-2, SOX13, ZFX, TRIM22, PRDM10, ZNF35, ARNT, ATF2, PBX3, MAFB, CDK8, MED1, CEBPD, MYB, SMAD1, KLF9, BCL11A, SP1, HNF4A, ATF7, ASH2L, NCOR2, MLLT1, NFATC3, MEF2B, FOXA2, ZNF207, EBF1, E2F8, ZNF692, ZNF823, HOXB13, KDM1A, YY1, RELA, TARDBP, ZFP36, SKIL, HIF1A, BATF, TAL1, ZNF143, KLF4, NCOA3, ZNF791, KDM5B, TP53, PKNOX1, ZNF687, ELF3, TBX21, BHLHE40, AR, PAX3-FOXO1, ZBTB40, ZNF366, IKZF2, BRD4, MAZ, ZSCAN23
- Target gene symbol (double-evidenced CRMs): TIAM1,EVA1C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 30
- Number of somatic mutations (non-coding): 0
- Related genes and loops