- Basic information
- CohesinDB ID: CDBP00416533
- Locus: chr21-31310855-31311106
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Data sourse: GSE101921, GSE68388
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Cell type: HMEC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 68%,
"7_Enh": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF283, NANOG, PGR, ZSCAN5D, FOXA2, NKX2-2, POU5F1, SOX2, ZFX, NME2, ZSCAN16, DUX4, ZSCAN5A, SMAD3, FOXA1, ZBTB48, HOXB13, SMARCC1, ERG, HOXC5, RELA, KDM1A, ZNF384, ASCL1, ZNF35, JUNB, MYC, SMARCA4, RAD21, ZBTB44, ARNT, HIF1A, PBX4, CHD7, DAXX, GATA3, NKX2-1, GABPA, STAT3, PAX5, TP63, MAX, GATA1, FOS, RCOR1, NKX3-1, MED1, TLE3, NR3C1, CEBPB, TEAD1, ETV1, PIAS1, SNAI2, CREB1, ESR1, OCA2, TP53, KLF9, GRHL2, NFKB1, JUN, MAFK, BAF155, EHF, BHLHE40, AR, GATA2, EGLN2, POU2F3, ASH2L, HSF1, MXI1, BRD4, PHIP, STAG2, AHR
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops