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Basic information

CohesinDB ID: CDBP00416543

Locus: chr21-31329285-31330125

Data sourse: ENCSR230ZWH, GSE67783, ENCSR153HNT, GSE68388

Cell type: K-562, Liver, HSPC, HuCC-T1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 59% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 53%, "5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, BCL6, FOXA2, CEBPA, EBF1, ZFX, ZNF600, XBP1, ZNF81, ZSCAN5A, FOXA1, DDX5, ARID3A, MLL4, HNF4G, ZNF300, RELA, ONECUT1, GRHL3, HIF1A, SOX11, RXRA, ZNF8, MAX, ZNF143, IKZF1, ZNF750, CEBPB, EZH2, ZNF3, TP53, BRD2, MAFK, SPI1, SP1, TBX21, HNF4A, AR, ZNF146, SIX2, IKZF2, BRD4, PHIP, RELB, TEAD4, NCOR2, STAG1, TFAP2C, EED

Target gene symbol (double-evidenced CRMs): TIAM1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 8

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156299,

eachgene

Deatailed information for cohesin site CDBP00416543