- Basic information
- CohesinDB ID: CDBP00416552
- Locus: chr21-31353912-31355900
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Data sourse: GSE104888, ENCSR000BSB, ENCSR000BLY, GSE121355, GSE25021, GSE131606, ENCSR000BTU, GSE93080, ENCSR000DZP, GSE86191, GSE138405, GSE206145-NatGen2015, ENCSR703TNG, GSE206145, GSE85526, GSE110061, GSE129526, GSE111913, ENCSR335RKQ, GSE68388, GSE50893
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Cell type: MCF-7, RPE, Fibroblast, HCT-116, Hela-Kyoto, HEKn, Ishikawa, GM12878, A-549, GM2588, SK-N-SH, RT-112, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 10% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.844
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES,Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 46%,
"7_Enh": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, ZNF660, ZSCAN5C, MEIS2, PATZ1, FOXA1, PBX2, INSM2, NFIC, ATF3, ZNF362, ZBTB44, CHD7, IKZF3, ZNF189, SMARCE1, ZNF467, ZNF629, ZNF506, ELF1, TRIM28, TEAD1, KLF6, ETV1, SNAI2, ZNF217, ESR1, HNF1B, ZNF561, JUN, TCF12, TAF3, EP300, KLF1, BAF155, MNT, ZBTB20, GATA6, LMO1, DPF2, TEAD4, ZNF92, TFAP2C, GLIS1, CHD8, ZNF263, POU5F1, MYCN, CTBP1, ZSCAN21, ZBTB48, ERG, ZBTB21, HOXC5, ZBTB8A, MYC, SMARCA4, FOXP2, RAD21, GRHL3, RXRA, NKX2-1, BATF3, APC, STAT3, RCOR1, ZNF639, VDR, ARNTL, ZNF750, ESRRA, CEBPB, FEZF1, GRHL2, TRPS1, EHF, IRF1, KLF17, HDAC2, GATA2, ZNF146, FLI1, SMARCA5, MRTFB, NCOA2, ZNF554, RUNX1, SMC1A, CBX1, ZMYM2, SIN3A, ZNF534, AFF4, SMAD3, ZNF770, SMARCC1, PRDM10, CREBBP, ZNF35, ZXDC, RUNX2, GATA4, OSR2, ZNF184, PBX4, NFIB, DAXX, ZBTB10, NRF1, ZEB2, FOXM1, SMARCB1, CDK8, FOS, MED1, ZEB1, ZNF558, ZXDB, MYB, ZMYM3, NIPBL, SP1, GSPT2, TFAP2A, REST, RBM25, CTBP2, PHIP, GLIS2, MBD2, FOXP1, BCOR, FOXA2, PAF1, ZNF600, ZNF692, WT1, CDK9, HOXB13, KDM1A, YY1, RELA, JUNB, ZIC2, HIF1A, GATA3, TAL1, MAX, NRIP1, HAND2, ZFP69B, KLF4, SP7, CEBPG, NR2F2, NR2F1, TCF7L2, KDM5B, TP53, PKNOX1, ZNF547, ELF3, BRD2, TBX21, BHLHE40, AR, YAP1, ZNF324, ZBTB42, NCOR1, BRD4, JUND, MAZ, ADNP, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 22
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
- Related loop:
chr21:31075000-31100000~~chr21:31325000-31350000,
chr21:31175000-31200000~~chr21:31325000-31350000,
chr21:31200000-31225000~~chr21:31325000-31350000,
chr21:31225000-31250000~~chr21:31325000-31350000,
chr21:31325000-31350000~~chr21:31425000-31450000,
chr21:31325000-31350000~~chr21:31500000-31525000,
chr21:31325000-31350000~~chr21:31550000-31575000,
chr21:31325000-31350000~~chr21:31575000-31600000,
chr21:31325000-31350000~~chr21:31600000-31625000,
chr21:31350000-31375000~~chr21:31475000-31500000,
chr21:31350000-31375000~~chr21:31500000-31525000,
chr21:31350000-31375000~~chr21:31550000-31575000,
chr21:31353810-31355703~~chr21:31365894-31367590,