- Basic information
- CohesinDB ID: CDBP00416564
- Locus: chr21-31390976-31391592
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Data sourse: GSE86191
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Cell type: HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"14_ReprPCWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, ZSCAN5D, TCF7L2, ZFX, EZH2, LMO2, ZSCAN5A, MAZ, APC
- Target gene symbol (double-evidenced CRMs): SCAF4,TIAM1,HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000156304,
ENSG00000142149,
- Related loop:
chr21:30350000-30375000~~chr21:31375000-31400000,
chr21:30875000-30900000~~chr21:31375000-31400000,
chr21:31075000-31100000~~chr21:31375000-31400000,
chr21:31150000-31175000~~chr21:31375000-31400000,
chr21:31200000-31225000~~chr21:31375000-31400000,
chr21:31250000-31275000~~chr21:31375000-31400000,
chr21:31375000-31400000~~chr21:31475000-31500000,
chr21:31375000-31400000~~chr21:31500000-31525000,
chr21:31375000-31400000~~chr21:31575000-31600000,
chr21:31375000-31400000~~chr21:31700000-31725000,
chr21:31375000-31400000~~chr21:31950000-31975000,
chr21:31375000-31400000~~chr21:32075000-32100000,
chr21:31375000-31400000~~chr21:32125000-32150000,