Browse_each

Basic information

CohesinDB ID: CDBP00416565

Locus: chr21-31392260-31393213

Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191

Cell type: Fibroblast, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 59% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 74%, "14_ReprPCWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZFX, XBP1, ERG3, ERG2, ZFHX2, ZNF596, RELA, ZNF384, NFIC, PRDM1, GRHL3, NRF1, NKX2-1, GABPA, HAND2, ARNTL, CDX2, KLF5, TRIM28, SCRT2, EZH2, LMO2, OCA2, PKNOX1, EGR2, ZNF22, TCF12, AR, ZNF479, SCRT1, BRD4, PHIP

Target gene symbol (double-evidenced CRMs): TIAM1,HUNK,SCAF4

Function elements

Human SNPs: .

Number of somatic mutations (coding): 16

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156299, ENSG00000156304, ENSG00000142149,

eachgene

Deatailed information for cohesin site CDBP00416565