- Basic information
- CohesinDB ID: CDBP00416568
- Locus: chr21-31396580-31397002
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Data sourse: GSE206145, GSE67783
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Cell type: RPE, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 56%,
"5_TxWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, ZNF660, SOX2, MEIS2, PATZ1, FOXA1, ZNF221, PBX2, MLL4, ZNF529, INSM2, NFIC, ZFP64, ZNF362, ZBTB44, PRDM1, IKZF3, CHD7, ZNF189, MZF1, TP63, ZNF320, ZNF467, ZNF629, KLF5, TEAD1, TRIM28, KLF10, LMO2, OCA2, PITX3, ZNF561, ZNF577, CTCF, TCF12, EP300, ARID5B, LMO1, GATA6, IRF4, ZNF528, ZNF350, ZNF280A, PDX1, RBPJ, TFAP2C, GLIS1, POU2F2, CHD8, ZNF263, BRD3, CDK7, MYCN, ZSCAN21, ZBTB17, ZBTB48, ERG2, SP4, ERG, PBX1, ZNF341, MYC, ONECUT1, SMARCA4, ZNF2, RAD21, GRHL3, GABPA, RCOR1, NFE2, ZNF639, ARNTL, NR3C1, CEBPB, STAT5B, KMT2A, EZH2, KLF8, FEZF1, EBF3, SPI1, ZNF664, GATA2, ZNF766, RUNX1, ZNF534, ZNF214, ZNF770, CBX8, ERG3, ZNF18, PRDM10, SMARCC1, RARA, ZNF35, NOTCH1, ZNF384, GATA4, OSR2, ZNF184, NFIB, ATF2, ZEB2, ZNF518A, PBX3, FOXM1, SP2, SUPT5H, CDK8, MAFB, MED1, ZNF558, ZXDB, MYB, SCRT2, PIAS1, ZNF680, ZNF37A, ZNF22, MAFK, BCL11A, SP1, POU2F3, ATF7, PHIP, TCF3, PRDM6, ZNF337, ZNF34, ZNF394, FOXA2, EBF1, ZNF600, ZNF692, GTF2B, WT1, ZNF30, ZSCAN16, MAFF, ZNF662, ZNF574, CDK9, HOXB13, KDM1A, YY1, ZNF610, ISL1, OTX2, GATA3, ZNF519, TAL1, GATA1, HAND2, CEBPG, ZFP69B, SP7, BCL11B, ZNF544, TCF7L2, TP53, PKNOX1, PHOX2B, BRD2, TBX21, AR, ZNF324, ZNF366, ZBTB42, MAML3, ZBTB26, RNF2, BRD4, SCRT1, MAZ, ZNF440, ZSCAN23, ZNF24, ZNF316
- Target gene symbol (double-evidenced CRMs): HUNK,TIAM1,SCAF4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000156304,
ENSG00000142149,
- Related loop:
chr21:30350000-30375000~~chr21:31375000-31400000,
chr21:30875000-30900000~~chr21:31375000-31400000,
chr21:31075000-31100000~~chr21:31375000-31400000,
chr21:31150000-31175000~~chr21:31375000-31400000,
chr21:31175000-31200000~~chr21:31400000-31425000,
chr21:31200000-31225000~~chr21:31375000-31400000,
chr21:31200000-31225000~~chr21:31400000-31425000,
chr21:31250000-31275000~~chr21:31375000-31400000,
chr21:31250000-31275000~~chr21:31400000-31425000,
chr21:31375000-31400000~~chr21:31475000-31500000,
chr21:31375000-31400000~~chr21:31500000-31525000,
chr21:31375000-31400000~~chr21:31575000-31600000,
chr21:31375000-31400000~~chr21:31700000-31725000,
chr21:31375000-31400000~~chr21:31950000-31975000,
chr21:31375000-31400000~~chr21:32075000-32100000,
chr21:31375000-31400000~~chr21:32125000-32150000,
chr21:31400000-31425000~~chr21:31575000-31600000,