- Basic information
- CohesinDB ID: CDBP00416572
- Locus: chr21-31409030-31410164
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Data sourse: ENCSR230ZWH, GSE67783, GSE86191, GSE98367, GSE206145, ENCSR153HNT
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Cell type: RPE, HCT-116, K-562, Liver, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 51%,
"7_Enh": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, LDB1, TOP2A, ZFX, ERG, RELA, NOTCH1, NKX2-1, GATA3, GABPA, TAL1, MED1, CEBPG, CEBPB, BCL11B, KMT2A, ETV1, MYB, SPI1, LMO1, IRF4, RELB
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 36
- Number of somatic mutations (non-coding): 0
- Related genes and loops