- Basic information
- CohesinDB ID: CDBP00416575
- Locus: chr21-31413807-31414086
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Data sourse: GSE67783
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Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 73%,
"5_TxWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, BCL6, CEBPA, ZNF263, POU5F1, MYCN, FOXA2, ZFX, TOP2A, XBP1, ZBTB48, ZSCAN5A, FOXA1, HLF, FOXF1, HOXB13, TWIST1, RELA, CREBBP, ATF3, AHR, RFX1, KDM4A, GRHL3, HIF1A, ARNT, SOX11, ATF2, SMAD4, XRCC5, NRIP1, FOS, HAND2, CEBPG, CEBPB, ZEB1, CREB1, ETV1, EZH2, ESR1, CTCF, JUN, SPI1, AR, ZNF644, ZBTB42, ATF7, JUND, MAZ, NFIL3, NCOA2, ZNF175, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops