- Basic information
- CohesinDB ID: CDBP00416576
- Locus: chr21-31416463-31417183
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Data sourse: GSE111913, ENCSR230ZWH, ENCSR917QNE
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Cell type: RT-112, Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"5_TxWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CEBPA, NKX2-2, FOXA2, ZSCAN21, ZNF692, ZBTB17, FOXA1, ZBTB33, YY1, ATF3, GATA4, ZNF184, RAD21, PBX4, RXRA, GATA3, ZNF518A, ZNF189, MAX, NKX3-1, FOS, MED1, CEBPG, CEBPB, ZFP69B, SCRT2, JUN, SP1, HNF4A, AR, JUND, SCRT1
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops