- Basic information
- CohesinDB ID: CDBP00416578
- Locus: chr21-31418798-31419272
-
Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
-
Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 72%,
"7_Enh": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CHD8, HMG20A, POU5F1, SOX2, ZFX, SOX13, XBP1, DUX4, ZSCAN5A, SAP130, SP4, RARA, ZNF384, MYC, ZNF362, ZNF184, RAD21, SP140, NKX2-1, ZNF48, SMAD4, STAT3, ZNF143, FOS, RCOR1, NR3C1, ZNF750, TEAD3, SCRT2, CCAR2, TCF7L2, EZH2, ZNF22, CTCF, JUN, GSPT2, HNF4A, AR, IKZF5, ZBTB26, SMC3, GATAD2A, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops