- Basic information
- CohesinDB ID: CDBP00416583
- Locus: chr21-31427100-31427474
-
Data sourse: GSE206145, GSE67783, GSE86191
-
Cell type: RPE, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 84%,
"5_TxWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFATC3, RUNX1, EZH2phosphoT487, CDK7, AFF4, MTA2, ZNF770, CDK9, KDM1A, ERG, RELA, RARA, MYC, RUNX3, SKIL, GATA3, GABPA, TAL1, PAX5, SUPT5H, IKZF1, MED1, MAF, JMJD1C, STAT5B, TRIM28, MYB, KMT2A, ESR1, SPI1, ARID5B, NIPBL, BHLHE40, LMO1, TBX21, IRF4, FLI1, IKZF2, BRD4, RELB, RUNX1-3
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops